---
title: "QUAMPO"
output: 
  flexdashboard::flex_dashboard:
    storyboard: true
    orientation: rows
    social: menu
    source: embed
---
```{r setup, include=FALSE}
library(flexdashboard)
library(tidyverse)
library(magrittr)
library(plotly)
library(crosstalk)
library(dygraphs)
library(leaflet)

devtools::load_all()

# Read temperature data
temp    <- readRDS(file = here::here("data/hobo_data.RDS"))
ibr     <- readRDS(file = here::here("data/ibr_data.RDS"))


ibr_mussel <- ibr[ibr$specie %in% "limpet",]
ibr_limpet <- ibr[ibr$specie %in% "mussel",]
  

# Read 
ports_m <- sf::st_read(dsn = here::here("data/ports_markers.shp"))

# Put data in a shared environment
temp_sd        <- crosstalk::SharedData$new(temp, key = ~site)
ibr_mussel_sd  <- crosstalk::SharedData$new(ibr_mussel, key = ~site, group = "xyz")
ibr_limpet_sd  <- crosstalk::SharedData$new(ibr_limpet, key = ~site, group = "xyz")
```


Calvi
===================================== 
Row {data-height=500}
-------------------------------------
###
```{r map1}

 leaflet::leaflet() %>%
    leaflet::addTiles() %>%
    leaflet::setView(lng = 8.77, lat = 42.57, zoom = 13) %>%
    leaflet::addMarkers(data = ports_m[ports_m$id %in% "Calvi",])

```

Row {.tabset .tabset-fade}
-------------------------------------
### Suivi de température des eaux portuaires
```{r dy1}

plot_tp(port = "Calvi")
```

### Interactive Biomarker Response (IBR)
```{r ibr1}

plot_ibr(port = "Calvi", species = "limpet", spn ="Mimachlamys varia")
```

L'Île Rousse
===================================== 
Row {data-height=500}
-------------------------------------
###
```{r map2}


 leaflet::leaflet() %>%
    leaflet::addTiles() %>%
    leaflet::setView(lng = 8.94, lat = 42.64, zoom = 13) %>%
    leaflet::addMarkers(data = ports_m[ports_m$id %in% "Ile Rousse",])

```

Row {.tabset .tabset-fade}
-------------------------------------
### Suivi de température des eaux portuaires
```{r dy2}

plot_tp(port = "Ile Rousse")

```

### Interactive Biomarker Response (IBR)
```{r ibr2}

plot_ibr(port = "Ile Rousse", species = "limpet", spn ="Mimachlamys varia")
```

Saint-Florent
===================================== 
Row {data-height=500}
-------------------------------------
###
```{r map3}

 leaflet::leaflet() %>%
    leaflet::addTiles() %>%
    leaflet::setView(lng = 9.29, lat = 42.69, zoom = 13) %>%
    leaflet::addMarkers(data = ports_m[ports_m$id %in% "Saint-Florent",])

```

Row {.tabset .tabset-fade}
-------------------------------------
### Suivi de température des eaux portuaires
```{r dy3}

plot_tp(port = "Saint-Florent")
```

### Interactive Biomarker Response (IBR)

```{r ibr3}

plot_ibr(port = "Saint-Florent", species = "limpet", spn ="Mimachlamys varia")
```


STARESO
===================================== 
Row {data-height=500}
-------------------------------------
###
```{r map4}

leaflet::leaflet() %>%
    leaflet::addTiles() %>%
    leaflet::setView(lng = 8.72, lat = 42.58, zoom = 13) %>%
    leaflet::addMarkers(data =ports_m[ports_m$id %in% "STARESO",])

```

Row {.tabset .tabset-fade}
-------------------------------------
### Suivi de température des eaux portuaires
```{r dy4}

plot_tp(port = "STARESO")
```

### Interactive Biomarker Response (IBR)

```{r ibr4}

plot_ibr(port = "STARESO", species = "limpet", spn ="Mimachlamys varia")
```


Information {data-orientation=rows data-icon="fa-info-circle"}
=====================================

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